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  1. UGENE
  2. UGENE-7749

[Ngs, crash] Genome Aligner reference consists only of N

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    Details

    • Tests Type:
      Functional/Unit
    • User Requests Number:
      2
    • Affect Type:
      Userdefined

      Description

      This crash may have existed prior to v37.

      1. Tools->NGS data analysis->Map reads to reference...
        The "Map NGS Reads to Reference" dialog appears.
      2. Set the attachment as the reference and _common_data/bwa/nrsf-chr21.fastq as reads.
      3. Click Start.
        Expected state: no crash, instead, either an error message or successful completion of the task.

        Attachments

        1. 53_reads.fastq
          5 kB
          Kirill Rasputin
        2. hs_ref_GRCh38.fa
          8.01 MB
          Evelina

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7441 Need revision code for Genome Aligner feature

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7612 Crash build tree+NGS "Map reads to reference"

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-1190 Crash on aligning with Genome Aligner when the first big part of reference sequence contains N's only

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              kir Kirill Rasputin
              Reporter:
              biserova Evelina
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: