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Type: Improvement
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: None
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Fix Version/s: None
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Component/s: None
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Labels:None
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Affect Type:Userdefined
Scenario
- Load "In Silico PCR" workflow example
- Select Read Sequence and set sequence to ../samples/fastq/eas.fastq
- Select In Silico PCR and set primer to data/primer3/rodrep_and_simple.txt
- Run worklow, it finished with "Subtask {In silico PCR workflow task} is canceled" error message without error reason.
The cause of the error is found if you enable detailed view, save log in temporary file and search for "cancel" word:
Primer sequence is too long: MML1 Mouse L1 repetitive sequence.. The pair is skipped Primer sequence is too long: PLMYS1 Mouse mys-1 transposon.. The pair is skipped Promoting task {Read document: 'rodrep_and_simple.txt'} to 'Finished' reducing bus from key=read-sequence:sequence to=sequence reducing bus from key=read-sequence:sequence to=sequence Promoting task {Multiple In Silico PCR} to 'Prepared' Promoting task {In silico PCR workflow task} to 'Prepared' One of the given do not fits acceptable length. Task cancelled.
Add "One of the given primers do not fits acceptable length. It is too long." in the error message.
- relates to
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UGENE-7787 [Pcr, wd] Improve logging when using too small primers
- Tested