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  1. UGENE
  2. UGENE-7781

Ugene doesn't display reverse strand alignments in BAM files

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 46
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-46-5
    • Affect Type:
      Userdefined

      Description

      See [https://github.com/ugeneunipro/ugene/issues/1115

      Ugene doesn't display alignments to the reverse strand at all (no warnings, no options etc). At the example pictures below you can see that Ugene doesn't display or refer to region near 630000 that is mapped to the reverse strand (blue color at the IGB screenshot) . The same behaviour observed for Ugene 30xx (2020) and for the latest 45.1 version.
      It would be good to have it fixed somehow. I attach the reduced bam file to check. Thanks in advance!|https://github.com/ugeneunipro/ugene/issues/1115]

        Attachments

        1. screenshot-2.png
          screenshot-2.png
          63 kB
        2. screenshot-1.png
          screenshot-1.png
          47 kB
        3. aaa.bam
          3 kB

          Activity

            People

            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            yalgaer Yuliya Algaer
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: