Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-7806

Error on opening sam file with reference when the same reference placed in the folder with assembly folder

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 45
    • Fix Version/s: 46
    • Component/s: None
    • Labels:
    • Affect Type:
      Userdefined

      Description

      1. Copy data/samples/Assembly/chrM.fa in the D:/Test/chrM.fa
      2. Open .../samples/Assembly/chrM.sam
        The "Import SAM File" dialog appears.
      3. Set:
        1. Reference: D:/Test/chrM.fa
        2. Destination D:/Test/chrM.ugenedb.
      4. Click Import.
        Expected: File is opened without any error
        Current state: Error:
        'Loading documents' task failed: Subtask {Opening view for document: chrM.sam} is failed: Subtask {Adding document to project: chrM.sam} is failed: Subtask {BAM/SAM file import: chrM.sam} is failed: Subtask {Prepare assembly file to import} is failed: Can not copy the 'D:/test/chrM.fa' file to 'D:/installer64_46.0/ugene-46.0/data/samples/Assembly/chrM.fa' Document was removed.

      It is completely unclear why we need to copy the reference file to the Assembly folder. Copying does not work because this file is present there.

      It is regression compare to 44 and 45.1 version.
       

      Attachments

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: