UGENE
  1. UGENE
  2. UGENE-791

"CNcbiRegistry: Syntax error in system-wide configuration file" error in BLAST+

    Details

    • Affect Type:
      Userdefined

      Activity

      Hide
      Denis Kandrov
      added a comment -

      Looks like a bug in the environment variables.

      Show
      Denis Kandrov
      added a comment - Looks like a bug in the environment variables.
      Hide
      Yura Vaskin
      added a comment - - edited

      The problem could be connected with .ini file created by blast.
      Here's a letter of user who faced clast crash problem:
      "Today Ugene crashed 30- 40 sec after opening I did not try to do any thing.
      But I made it to work when I removed my comodo firewall. Blast also had
      problem of initiating which was corrected by removing 'Biolign' (ncbi.ini)
      file.
      Now its well and fine.
      "

      Show
      Yura Vaskin
      added a comment - - edited The problem could be connected with .ini file created by blast. Here's a letter of user who faced clast crash problem: "Today Ugene crashed 30- 40 sec after opening I did not try to do any thing. But I made it to work when I removed my comodo firewall. Blast also had problem of initiating which was corrected by removing 'Biolign' (ncbi.ini) file. Now its well and fine. "
      Hide
      Denis Kandrov
      added a comment -

      I found in documentation for BLAST at here that environment variable NCBI is set where search ncbi.ini(on Windows) or .ncbirc (on Unix-like system) file.

      Show
      Denis Kandrov
      added a comment - I found in documentation for BLAST at here that environment variable NCBI is set where search ncbi.ini(on Windows) or .ncbirc (on Unix-like system) file.
      Hide
      Denis Kandrov
      added a comment -

      I create a dummy .ini file in the working directory of BLAST program.
      Fixed in rev. 1736 and 1739.

      Show
      Denis Kandrov
      added a comment - I create a dummy .ini file in the working directory of BLAST program. Fixed in rev. 1736 and 1739.
      Hide
      German Grekhov
      added a comment -

      Tested.

      Show
      German Grekhov
      added a comment - Tested.
      Hide
      Yuliya Algaer
      added a comment -

      Reviewed.

      Show
      Yuliya Algaer
      added a comment - Reviewed.

        People

        • Assignee:
          Denis Kandrov
          Reporter:
          Olga Golosova
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          Dates

          • Created:
            Updated:
            Resolved: