[UGENE-7935] [Msa, crash] Pairwise alignment, Smith-Waterman SSE2 7000A - Jira

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Type: Bug
Status: Tested
Priority: Major
Resolution: Fixed
Affects Version/s: 1.12.1, 1.12.2, 1.12.3, 1.13, 1.13.1, 1.13.2, 1.13.3, 1.14, 1.14.1, 1.14.2, 1.15, 1.15.1, 1.16, 1.16.1, 1.16.2, 1.17, 1.18, 1.19, 1.20, 1.21, 1.22, 1.23, 1.24, 1.25, 1.26, 1.26.1, 1.26.2, 1.26.3, 1.27, 1.28, 1.28.1, 1.29, 1.30, 1.31, 1.31.1, 1.32, 33, 34, 35, 36, 37, 38, 39, 38.1, 40, 41, 40.1, 42, 43, 44, 45, 46, 47, 48
Fix Version/s: 51
Component/s: Basic-MSA, Basic-Other
Labels:
- crash_report
- smith-waterman;
Environment:

SSE2

Create an alignment with 7000 'A':
1. Tools->Random sequence generator...
  The "Generate Sequence" dialog appears.
2. Length=7000
  Number of sequences=2
  Content=Base content (%)
  A=100, C=0, G=0, T=0
  Output file=/your/path/out.aln
  Format=CLUSTALW
3. Click "Generate".
  The Alignment Editor appears.
Run the SSE2 task:
1. Open the Pairwise Alignment tab of the Options Panel.
2. Set Sequences.
3. Select Algorithm: Smith-Waterman
4. Click "Align".
Wait for the crash. It took 10 minutes on my computer.