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  1. UGENE
  2. UGENE-799

pseudogenes are exported incorrectly (GenBank)

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.1
    • Fix Version/s: 1.10.2
    • Component/s: None
    • Labels:
      None
    • Environment:

      FC15

      Description

      The typical GenBank annotation of pseudogenes likes like this:

      gene 106648..107590
      /note="transposase, degenerate; this region contains one or
      more premature stops and/or frameshifts"
      /locus_tag="A35_B0064"
      /pseudo

      If you open such a file in UGENE and export them again to a GenBank file, it merges the last two lines and produces the following output:

      gene 106648..107590
      /note="transposase, degenerate; this region contains one
      or more premature stops and/or frameshifts"
      /locus_tag=""A35_B0064" /pseudo"

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            Assignee:
            oigl Olga Golosova
            Reporter:
            tolot27 Mathias Walter
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: