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  1. UGENE
  2. UGENE-802

Incorrect behaviour of getSequenceData function on long sequences

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.1
    • Fix Version/s: 1.10.2
    • Component/s: None
    • Labels:
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      Description

      Currently, if there is a long sequence that is stored in several chunks (for example, if a sequence is 3 millions long, then the chunks are: 0..1048576, 1048576..2097152, 2097152..3000000), then the following function:

      QByteArray SQLiteSequenceDbi::getSequenceData(const U2DataId& sequenceId, const U2Region& region, U2OpStatus& os)

      behaves incorrectly if the right border of the input region equals to a chunk border (for example, U2Region(6, 1048570)).
      In this case the returned result contains also the next chunk (for example, 1048576..2097152).

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            Assignee:
            oigl Olga Golosova
            Reporter:
            oigl Olga Golosova
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              Dates

              Created:
              Updated:
              Resolved: