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  1. UGENE
  2. UGENE-8070

Error on converting annotation in FPKM and Differential formats

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-51-1
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open worlflow with Read annotations -> Write annotations elements.
      2. Select input file Genbank/murine.gb in Read annotations.
      3. Select Document format=Differential in Write annotations.
      4. Run
        Current state: Workflow finished with errors.
        [ERROR]Required column is missed: test_id
        [ERROR]Subtask {Save document}

        is failed: Required column is missed: test_id

      5. Select Document format=FRKM Tracing Format in Write annotations.
      6. Run
        Current state: Workflow finished successfully. but there is error in the log
        FPKM Tracking Format saving error: tracking ID shouldn't be empty!
        [ERROR][16:11] FPKM Tracking Format saving error: one or more errors occurred while saving a file, see TRACE log for details!

      Maybe these are outdated formats: GTF, Differential and FPKM Tracking Format.
      See help for write annotation element: https://doc.ugene.net/wiki/display/UM/Write+Annotations+Element:
      Available values are:
      CSV
      GenBank
      GFF

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated: