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Type:
Bug
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: 1.27, 1.28, 1.28.1, 1.29, 1.30, 1.31, 1.31.1, 1.32, 33, 34, 35, 36, 37, 38, 39, 38.1, 40, 41, 40.1, 42, 43, 44, 45, 46, 47, 48, 49, 50
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Fix Version/s: None
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Labels:
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Tests Type:Functional/Unit
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Affect Type:Userdefined
- Open the WD ("Run or Create Workflow" on the "Start Page").
The "Choose Output Directory" dialog may appear. Set any directory and click "OK".
Finally the WD window appeared. - Create the "Read Alignment->Write Alignment" workflow.
- Add the "Read Alignment" element from the "Data Readers" category of the "Elements" tab (expand the category by clicking its title if necessary, then drag the element from the Palette to the Scene).
- Add the "Write Alignment" element from the "Data Writers" category.
- Make a connection between elements in the Scene by dragging the arrow between the "Read Alignment" element's output port and the "Write Alignment" element's input port.
- Set "_common_data/sanger/alignment.ugenedb" as input.
- Select the "Read Alignment" element by clicking on it on the Scene.
The "Dataset 1" tab appears in the "Parameters" section of the "Property Editor". - On this tab, click "Add file(s)".
The "Select file" dialog appears. - Select the desired file.
- Select the "Read Alignment" element by clicking on it on the Scene.
- Open the Log if it's not already open (press Alt+3 (⌥+3)).
Logging "[Core Services][ERROR]" should be enabled by default. - Press Ctrl+R (⌘+R) (Run workflow).
Current state: Trying to recover from error: Empty alignment passed for writing to C:/Users//workflow_output/2024.04.23_12-27/muscle_alignment.aln at C:\BuildAgent\work\release\ugene\src\plugins\workflow_designer\src\library\DocWorkers.cpp:850
Expected state: correct behavior will become clear in the process. I think it must either be an unsupported format error, or the task completed without errors with a non-empty output file (warnings are acceptable).