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  1. UGENE
  2. UGENE-8141

Workflow "Annotate with UQL Element" does not save annotation as expected

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    Details

    • Type: Bug
    • Status: Tested
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50
    • Fix Version/s: 51
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-51-RELEASE
    • Affect Type:
      Userdefined

      Description

      This issue mentioned on documentation page by Esita Kayamba.

      Scenario: 

      1. Create the following workflow: Read sequence, Annotate with UQL Element, Write sequence, save as test.uwl. 
      2. Load test.uwl file, see attachment.
      3. Set Read sequence input file=samples/fasta/human_T1.fa
      4. Set Write sequence: default file with file format=GenBank
      5. Set  Annotate with UQL Element =patten  "TATAAAAA", see attachment: qr.url
      6. Run workflow
        Expected: 38 annotations with expected pattern in file with GenBank format
        Actual: no any annotations in the result file
        Note, string "38 groups" (38 annotations implied)  are present in the log while there are no annotation at all in the result genbank file.

        Attachments

        1. gr.uql
          0.3 kB
          Svetlana Samoilenko
        2. screenshot-1.png
          26 kB
          Svetlana Samoilenko
        3. test.uwl
          2 kB
          Svetlana Samoilenko

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              People

              Assignee:
              kir Kirill Rasputin
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: