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  1. UGENE
  2. UGENE-8165

Crash in parsing PDB format: unknown residue name: UNL (unknown ligand)

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      Looks like the reason of several crashes is absence of parsing UNL atom in PDB format.

      Output for crash 26163:

      Start PDB parsing: /Users/kamdiehl/Desktop/Alphafold Models CDKA1/CDKA1 phosphorylated and ATP/CDKA1 phospho atp .pdb
      PDB warning: unknown residue name: UNL

      Crash reports: 26143, 25938(49.1), 26163(48.1),  

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              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              s.samoilenko Svetlana Samoilenko
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                Dates

                Created:
                Updated: