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  1. UGENE
  2. UGENE-916

FASTQ format support

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.4
    • Fix Version/s: 1.11
    • Component/s: None
    • Labels:
      None

      Description

      Currently FASTQ format is not properly supported. UGENE can't open even sample sequences from Wikipedia:

      @SEQ_ID
GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT
+
!''*((((***+))%%%++)(%%%%).1***-+*''))**55CCF>>>>>>CCCCCCC65

      @SRR001666.1 071112_SLXA-EAS1_s_7:5:1:817:345 length=36
GGGTGATGGCCGCTGCCGATGGCGTCAAATCCCACC
+SRR001666.1 071112_SLXA-EAS1_s_7:5:1:817:345 length=36
IIIIIIIIIIIIIIIIIIIIIIIIIIIIII9IG9IC

      Moreover, the Workflow Designer doesn't detect that it doesn't support a FASTQ file and hangs on the sequence converting task (another issue should be created?).

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            Assignee:
            shutov Shutov Ilya
            Reporter:
            oigl Olga Golosova
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              Dates

              Created:
              Updated:
              Resolved: