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  1. UGENE
  2. UGENE-991

Short read alignment: add generic support for paired-end reads in GUI and provide this option for Bowtie and BWA

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.12
    • Component/s: NGS
    • Affect Type:
      Userdefined

      Description

      Currently it is possible to align only single-end short reads using UGENE's integrated aligners. However both bowtie and BWA are capable of aligning paired-end reads. This option has to be provided for user.
      The changes to the GUI of "Align short reads" dialog should be generic: dialog has to support both modes, depending on the capabilities of the aligner.

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            Assignee:
            mfursov Mikhail Fursov
            Reporter:
            kokonech Konstantin Okonechnikov
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              Dates

              Created:
              Updated:
              Resolved: