[UGENE-5620] Message when input reference alphabet is not DNA Created: 22/May/17  Updated: 17/Aug/17  Resolved: 10/Jul/17

Status: Closed
Project: UGENE
Component/s: Basic-MSA, Basic-Nucl, Workflow
Affects Version/s: None
Fix Version/s: 1.27

Type: Improvement Priority: Major
Reporter: Olga Golosova Assignee: Kirill Rasputin
Resolution: Fixed  
Labels: sanger, usability
Remaining Estimate: Not Specified
Time Spent: Not Specified
Original Estimate: Not Specified

Issue Links:
Relates
relates to UGENE-5533 WD: Crash in "Trim and align Sanger r... Closed
Story Points: 2
Assigned Tester: Aleksey Tiunov [X] (Inactive)
Epic Link: Sanger
Sprint: DEV-27-6, DEV-27-8
Affect Type: Userdefined

 Description   

The alphabet of the reference sequence, used to align Sanger reads to may be only "DNA Standard" or "DNA Extended". If it is not so, end the align task with an error and show the following error notification:

The align task failed: the input reference sequence 'ref_name' contains characters that don't belong to DNA alphabet.



 Comments   
Comment by Kirill Rasputin [ 02/Jun/17 ]

Fixed.

Comment by Dmitrii Sukhomlinov [ 06/Jun/17 ]

The Align task ends with this error every time

Comment by Kirill Rasputin [ 06/Jun/17 ]

Fixed.

Comment by Aleksey Tiunov [X] (Inactive) [ 26/Jun/17 ]

The error message is incorrect if the aligning algorithm is launched from the Workflow Designer.

Comment by Yuliya Algaer [ 17/Aug/17 ]

Reviewed.

Generated at Wed Jan 15 08:52:46 NOVT 2025 using Jira 8.5.0#805000-sha1:facbf8be6a56ed8ab71dea158b6e159962506101.