[UGENE-6281] "Call Variants with SAMtools" sample executed with error "Not enough assemblies" Created: 09/Nov/18  Updated: 06/Dec/18  Resolved: 28/Nov/18

Status: Closed
Project: UGENE
Component/s: NGS, Workflow
Affects Version/s: master
Fix Version/s: 1.32

Type: Bug Priority: Blocker
Reporter: Svetlana Samoilenko Assignee: Kirill Rasputin
Resolution: Cannot Reproduce  
Labels: None
Remaining Estimate: Not Specified
Time Spent: Not Specified
Original Estimate: Not Specified

Issue Links:
Relates
relates to UGENE-6170 Correct names of document formats in ... Closed
Story Points: 3
Assigned Tester: Svetlana Samoilenko
Sprint: DEV-32-4
Affect Type: Userdefined

 Description   

The issue is not reproduced in the released UGENE version 1.31.1, only on the master branch.

Scenario:

  1. Open the WD.
  2. Open "Call variants with SAMtools" sample workflow.
  3. Select "Read Assembly (BAM/SAM)" and add
    "_common_data/bam/chrM.sorted.bam".
  4. Select "Read Sequence" and add "_common_data/cmdline/call-variations/chrM.fa".
  5. Run the workflow.
    Expected result: there are no errors, "variants.vcf" file is created.
    Actual result: "Not enough assemblies" error appears.

Affected tests:
GUITest_regression_scenarios_test_1735
GUITest_regression_scenarios_test_2192
GUITest_regression_scenarios_test_2569
GUITest_regression_scenarios_test_2662

 Comments   
Comment by Olga Golosova [ 09/Nov/18 ]

The issue might have been appeared after reverting UGENE-6170.

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