[UGENE-791] "CNcbiRegistry: Syntax error in system-wide configuration file" error in BLAST+ Created: 26/Jan/12  Updated: 08/Jan/18  Resolved: 23/Mar/12

Status: Closed
Project: UGENE
Component/s: Basic-Nucl, Basic-Protein
Affects Version/s: 1.10.1
Fix Version/s: 1.10.4

Type: Bug Priority: Major
Reporter: Olga Golosova Assignee: Denis Kandrov
Resolution: Fixed  
Labels: blast, crash, internet, request, stability
Remaining Estimate: Not Specified
Time Spent: Not Specified
Original Estimate: Not Specified

Affect Type: Userdefined

 Description   

See http://ugene.unipro.ru/forum/YaBB.pl?num=1327509199/0#0

 Comments   
Comment by Denis Kandrov [ 15/Feb/12 ]

Looks like a bug in the environment variables.

Comment by Yura Vaskin [ 17/Feb/12 ]

The problem could be connected with .ini file created by blast.
Here's a letter of user who faced clast crash problem:
"Today Ugene crashed 30- 40 sec after opening I did not try to do any thing.
But I made it to work when I removed my comodo firewall. Blast also had
problem of initiating which was corrected by removing 'Biolign' (ncbi.ini)
file.
Now its well and fine.
"

Comment by Denis Kandrov [ 07/Mar/12 ]

I found in documentation for BLAST at here that environment variable NCBI is set where search ncbi.ini(on Windows) or .ncbirc (on Unix-like system) file.

Comment by Denis Kandrov [ 23/Mar/12 ]

I create a dummy .ini file in the working directory of BLAST program.
Fixed in rev. 1736 and 1739.

Comment by German Grekhov [ 06/Feb/13 ]

Tested.

Comment by Yuliya Algaer [ 25/Apr/13 ]

Reviewed.

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