Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-1016

"Very high similarity" for a standard Bowtie2 output

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.4
    • Fix Version/s: 1.11.5, 1.12
    • Component/s: NGS
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      I've created a SAM file from reads using Bowtie2 according to the standard Bowtie2 example.
      When I tried to open the result file ("eg1.sam") in UGENE, the "Select correct document format" dialog appeared. It showed that BAM/SAM file import has score 8 (very high similarity).
      Why is that? What's wrong with the file? Maybe the import should be corrected to include such standard cases.

        Attachments

          Activity

            People

            Assignee:
            ggrekhov German Grekhov
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: