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  1. UGENE
  2. UGENE-1016

"Very high similarity" for a standard Bowtie2 output

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.4
    • Fix Version/s: 1.11.5, 1.12
    • Component/s: NGS
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      I've created a SAM file from reads using Bowtie2 according to the standard Bowtie2 example.
      When I tried to open the result file ("eg1.sam") in UGENE, the "Select correct document format" dialog appeared. It showed that BAM/SAM file import has score 8 (very high similarity).
      Why is that? What's wrong with the file? Maybe the import should be corrected to include such standard cases.

        Attachments

        1. eg1.sam
          3.20 MB
          Olga Golosova

          Activity

            People

            Assignee:
            ggrekhov German Grekhov
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: