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Type: Improvement
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Status: Closed
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Priority: Critical
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Resolution: Fixed
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Affects Version/s: 1.11.1
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Fix Version/s: 1.30
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Component/s: Basic-Nucl
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Labels:
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Story Points:1
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Affect Type:Userdefined
Currently, the tandem repeat finder allows only a minimal repeat count of x3. That makes sense for short repeats such as mini- or micro-satellites but not for long tandem repeats.
The attached sequence contains a two-copy tandem repeat with a period size of 226 starting at position 110. It is not detected by the repeat finder.
Proposal: allow a minimal repeat count of x2 (maybe starting from a certain length), but keep the default to x3.
- relates to
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UGENE-5949 Incorrect parameters for tandem repeats search
- Closed