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  1. UGENE
  2. UGENE-1739

Optimizations of the Call Variants pipeline

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.13
    • Component/s: Workflow
    • Labels:
    • Sprint:
      DEV-2013/08/08, TEST-2013/08/15
    • Affect Type:
      Userdefined

      Description

      The Call Variants pipeline works slower than original SAMTools for big files. Find and download BAM and reference of Toxoplasma gondii and use it for optimizations.

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          Issue Links

          is blocked by

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-1842 Pass reference sequence as a url

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-1841 Support "Bcftools | vcfutils.pl" pipe

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              ggrekhov German Grekhov
              Reporter:
              vaskin Yura Vaskin
              Assigned Tester:
              raian
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: