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  1. UGENE
  2. UGENE-3087

Short reads alignment failed

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.14
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      1. Get a huge sequence (e.g. NC_000067 from NCBI)
      2. Copy small part of the sequence(~50) and create a set (~100k) of short reads from it, all reads should be equal
      3. Align these short reads to reference sequence from step 1 using Bowtie
      4. Wait and accept appeared import dialog
        Current state: UGENE can not open the result, logged error - [Can't decompress data]

      Additional:

      1. Move result sam file to another directory(without any additional files that appear during alignment)
      2. Open it from UGENE
        Current state: import succeeded

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              Assignee:
              epushkova Eugenia Pushkova [X] (Inactive)
              Reporter:
              epushkova Eugenia Pushkova [X] (Inactive)
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: