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  1. UGENE
  2. UGENE-2760

An error occurs when converting bam to ugenedb on some systems

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.14
    • Fix Version/s: 1.14
    • Component/s: NGS
    • Labels:
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-19/06/2014, DEV-26/06/2014
    • Affect Type:
      Userdefined

      Description

      fails on ugene-quad-ubuntu and mac os
      link to scenario:
      https://ugene.unipro.ru/svn/ugene/test/scenarios/Common%20scenarios/done/Dna_assembly/conversions/test_0004.txt

      error:
      Subtask

      {Convert BAM to UGENE database (resule.ugenedb)}

      is failed: Converting assembly from NC_008253.sam.bam_sorted.bam to resule.ugenedb failed: Can't decompress data. Document was removed

      failed test
      GUITest_dna_assembly_conversions_test_0004

        Attachments

          Issue Links

          is duplicated by

          Bug - A problem which impairs or prevents the functions of the product. UGENE-3087 Short reads alignment failed

          • Major - Major loss of function.
          • Closed
          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6755 Opening a BAM or SAM file with dots in the file name

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              epushkova Eugenia Pushkova [X] (Inactive)
              Reporter:
              vmalin Vladimir Malinovskiy
              Assigned Tester:
              Denis Kandrov
              Watchers:
              4 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

                  Estimated:
                  Original Estimate - 6 hours
                  6h
                  Remaining:
                  Remaining Estimate - 6 hours
                  6h
                  Logged:
                  Time Spent - Not Specified
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