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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Fixed
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Affects Version/s: 1.21
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Fix Version/s: 1.25
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Labels:
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Story Points:1
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Tests Type:Functional/Unit
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Sprint:DEV-23-1, DEV-24-2, DEV-25-1
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Affect Type:Userdefined
- Tools -> NGS data analysis -> Map reads to reference.
- Choose BWA or BWA MEM.
- Reference: _common_data/bwa/index1/ecoli.fa.amb.
- Reads:
- _common_data\e_coli\e_coli_reads/e_coli_1_1.fastq
- _common_data\e_coli\e_coli_reads/e_coli_1_2.fastq
- Click Start.
- Click Import.
=> Error appears: Truncated file: "ecoli.sam"Document was removed.
Another scenario:
- Tools -> NGS data analysis -> Map reads to reference.
- Choose BWA or BWA MEM.
- Reference: _common_data/bwa/index1/ecoli.fa.amb.
- Set "Paired-end".
- Reads:
- _common_data\e_coli\e_coli_reads/e_coli_1_1.fastq [Upstream]
- _common_data\e_coli\e_coli_reads/e_coli_1_2.fastq [Downstream]
- _common_data\e_coli\e_coli_reads/e_coli_2_1.fastq [Upstream]
- _common_data\e_coli\e_coli_reads/e_coli_2_2.fastq [Downstream]
- Click Start.
=> Error appears: In paired-end mode it possible to analyze only 2 read sets using BWA.
So, it is possible to set this data, but it is impossible to get result. The same is in WD.
- relates to
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UGENE-5163 WD: Short reads aligners don't work with datasets
- Closed