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  1. UGENE
  2. UGENE-5431

SAFE_POINT is triggered on collapsing group removing

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.23
    • Fix Version/s: 34
    • Component/s: Basic-MSA
    • Story Points:
      3
    • Sprint:
      DEV-34-1, DEV-34-4, DEV-34-5, DEV-34-8, DEV-34-RELEASE
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open "_common_data/scenarios/msa/ma2_gapped.aln".
      2. Remove all columns except the first one.
      3. Toggle the collapsing mode.
        Expected result: there are two collapsed groups.
      4. Remove the first group.
        Current result: the SAFE_POINT is triggered: 
        [ERROR][16:37] Trying to recover from error: Internal error: unexpected row index was passed to MAlignmnet::getRow! at ../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignment.h:582

        Attachments

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6678 Regression: Wrong result of collapsing mode for sequences with gaps

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-1575 Incorrect behavior in collapsed mode

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-2285 Removing gaps in MSA with Backspace key works incorrectly with collapsing mode enabled

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6584 Wrong deletion of collapsed sequences

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-1585 Shifting MSA region works wrong with collapsing mode enabled

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              atiunov Aleksey Tiunov [X] (Inactive)
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: