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  1. UGENE
  2. UGENE-5889

Online installer: DIAMOND component and license

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    Details

    • Story Points:
      2
    • Epic Link:
    • Sprint:
      DEV-29-3
    • Affect Type:
      Userdefined

      Description

      On Windows (32-bit, 64-bit) and 32-bit Linux:

      • There shouldn't be "DIAMOND" group on the "External Tools" page of the UGENE Application Settings.
      • There shouldn't be "Build DIAMOND Database" and "Classify Sequences with DIAMOND" workflow elements.

      On 64-bit Linux and Mac OS X:
      In the "Unipro UGENE Installer Setup" wizard of the Universal package add the following items according to the specification:

      • On the "Select Components" page add the "Classification with DIAMOND" group with a check box and three sub-items: "DIAMOND external tools", "UniRef50" and "UniRef90".
      • On the "License Agreement" page add the "DIAMOND" item with it's license (specify the license in a comment to this issue).

      Installation folder
      Unpack the Uniprot databases and the external tools to the "data/ngs_classification/diamond" subfolder of the UGENE installation folder.

        Attachments

          Issue Links

          is blocked by

          New Feature - A new feature of the product, which has yet to be developed. UGENE-5880 Online installer: general modifications, addition of the metagenome data group

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-5890 Integrate DIAMOND as an external tool

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-5892 Add "Classify Sequences with DIAMOND" workflow element

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-5891 Add "Build DIAMOND Database" workflow element

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              atiunov Aleksey Tiunov [X] (Inactive)
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Eugenia Pushkova [X] (Inactive)
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: