Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-6001

Detailed CAP3 report

    XMLWordPrintable

    Details

      Description

      At the end of the CAP3 external tool execution UGENE should pop-up an info notification. An HTML report should be opened when the notification is clicked. See similar feature for the Sanger reads mapping task.

      The report details should be the following:

      • Number of assembled contigs: the_contigs_num
      • Reads assembled to contig 1 (reads_num):
        • the_list_of_reads_with_direction
      • If there are more than one contig, the previous item with the corresponding sub-items may be present several times in the report (with the appropriate contig number). The previous item is not present, if CAP3 haven't returned any contigs.
      • CAP3 execution log:
        • text_from_the*.info_file_generated_by_CAP3._

        Attachments

        1. CAP3_execution_log_example.png
          10 kB
          Olga Golosova
        2. map_report.png
          8 kB
          Olga Golosova

          Issue Links

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: