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  1. UGENE
  2. UGENE-603

UGENE fails to open some HMMER3 files provided by PFAM database

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    Details

    • Affect Type:
      Userdefined

      Description

      From users feedback:

      the HMMER3 plugins failed to recognize natives HMM file format
      which is provided by PFAM databases. I found this problems come from usage
      of semicolon marks ( ; ) and uncommon line identifier such as BM symbol in
      the original file. This problems forced me to recompile the PFAM.hmm file
      again from the seed file. However, removing all semicolons and unrecognize
      line marks from the original file also works well.

        Attachments

        1. a.hmm
          19 kB
          Mikhail Fursov

          Activity

            People

            Assignee:
            dkandrov Denis Kandrov
            Reporter:
            mfursov Mikhail Fursov (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: