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  1. UGENE
  2. UGENE-6252

Add MetaPhlAn2 files to Linux 64-bit and macOS external tools packages

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.31
    • Fix Version/s: 1.32
    • Component/s: Basic-Other, NGS
    • Labels:
    • Environment:

      Linux 64-bit, macOS

    • Story Points:
      2
    • Epic Link:
    • Sprint:
      DEV-32-2
    • Affect Type:
      Userdefined

      Description

      Create a subfolder "metaphlan2-2.7.7" in the Linux 64-bit and macOS external tools packages.

      Add the attached files to these subfolders:

      • metaphlan2.py
      • utils/read_fastx.py
      • license.txt

      Make sure that "numpy" python module is installed. Then check that command "python metaphlan2.py -h" runs successfully (MetaPhlAn2 parameters are described in the help information) on the following systems:

      • Mac 10.7.5
      • Debian7 x64

        Attachments

          Issue Links

          relates to

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6264 Online installer: MetaPhlAn2 component and license, mpa_v20_m200 database

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6282 Modify "python" external tool to include Biopython

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

            Activity

              People

              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Kirill Rasputin
              Watchers:
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                Dates

                Created:
                Updated:
                Resolved: