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  1. UGENE
  2. UGENE-6312

Crash on ensembling classification data of big size

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    • Story Points:
      5
    • Sprint:
      DEV-32-7, DEV-32-8
    • Affect Type:
      Userdefined

      Description

      "Ensemble Classification Data" workflow element is not able to process big data. A crash occurs. See, for example, the scenario below.

      Scenario:

      1. Open "Parallel NGS reads classification" workflow sample, set "Single-end" reads.
      2. Select "Read NGS SE Reads" element, input file "C_S10_final_R1.fastq" (it is about 5.9 Gb).
      3. Optionally, remove the MetaPhlAn2 element as it will not affect the result.
      4. Run the workflow.
        Current result: all classification steps (CLARK, Kraken and DIAMOND) pass. The ensemble element start working and the application crashes.
        A CSV file created by the ensemble element is empty.

      The same result happens in case of paired-end version of the workflow when only two classifiers are present (CLARK and Kraken).

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              Assignee:
              kir Kirill Rasputin
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
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                Dates

                Created:
                Updated:
                Resolved: