Input and output data pages when creating/editing an element with command-line tool

On both pages ("Input data", "Output data") modify the table as follows:

• Rename types:
  • "Multiple alignment" > "Alignment"
  • "Sequence with annotations" > "Annotated sequence"
  • "Set of annotations" > "Annotations"
• Rename "Read as"/"Write as" to "Argument value"
• For "Annotated sequence" type leave only appropriate formats in the "Argument value" column (i.e. formats that support both sequence and annotations data).
• Rename values in the "Argument value" columns:
  • all formats to "URL to format_name file with data", e.g. "URL to CLUSTALW file with data", "URL to FASTA file with data", etc.
  • for "String" type rename "Text file" to "URL to TXT file with data", "String value" > "String data value", "Output file url" > "Output URL".
• Add description labels before the tables:
  • before "Input data" table:

    To input data from other workflow element(s) to this element add one or several port(s) of the required type(s).
    
    The incoming data will be either saved into a file and the file URL will be specified as an argument in the command to run the tool or the input string can be used directly in the command in case of the "String" type, "String data value" argument value.
    

  • before "Output data" table

    To output data from this element to other workflow element(s) add one or several port(s) of the required type(s).
    
    It is assumed that the command-line tool creates some file(s). This element reads the data according to the specified type and format. Alternatively, it is possible to pass the output file/folder URL , see the "String" type, "Output URL" argument value.