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  1. UGENE
  2. UGENE-6541

Add possibility to realign sequence(s) to other sequences in an alignment

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.32
    • Fix Version/s: 35
    • Component/s: Basic-MSA
    • Labels:
    • Story Points:
      3
    • Sprint:
      DEV-34-1, DEV-34-2, DEV-35-1, DEV-34-RELEASE, DEV-37-1, DEV-37-2, DEV-37-3
    • Affect Type:
      Userdefined

      Description

      Add "Realign sequence(s) to other sequences" button to the Alignment Editor toolbar. It should be located to the right from the "Align sequence(s) to this alignment" button.

      This button should be active when one or several sequences are selected in the alignment, but not all of them, none of them, their regions.

      When the button is clicked, each of the selected sequence should be aligned to an alignment already made of non-selected sequences. The same alignment method as for "Align sequence(s) to this alignment" should be used (UGENE native or MAFFT depending on the tool availability, reuse the same functions call in the source code).

        Attachments

        1. ADDED_SEQUENCE.fa
          0.0 kB
          Svetlana Samoilenko
        2. align_with_MAFFT.jpg
          552 kB
          Svetlana Samoilenko
        3. HIV-1_transl_with_added_sequence.aln
          12 kB
          Svetlana Samoilenko

          Issue Links

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              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              5 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: