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  1. UGENE
  2. UGENE-7236

SAFE_POINT on extracting consenus from assembly in GFF format

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    Details

    • Type: Bug
    • Status: Tested
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.29, 49, 50
    • Fix Version/s: 51
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-50-RELEASE
    • Affect Type:
      Userdefined

      Description

      Issue is present at least since 1.29 version.
      Scenario:

      1. Select "Tools->NGS data analysis->Extract consensus from assemblies..."
      2. In Workflow designer select "samples/Assembly/chrM.sam" as input
      3. Select Write sequence element
      4. Set Document format=GFF
      5. Click Validate
      6. Warning: Empty input slot: Set of annotation.
        Note, that there are no annotation for this format.
        Looks like this format must be excluded from this case.
      7. Click Run
        Expected state: Execution finished with warning?
        Current state: SAFE_POINT 
        Trying to recover from error: Add sequence to document: empty length at D:\ugene\ugene\src\plugins\workflow_designer\src\library\DocWorkers.cpp:229
Assertion failed: 0 != seq.length(), file D:\ugene\ugene\src\plugins\workflow_designer\src\library\DocWorkers.cpp, line 229

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          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7445 SAFE_POINT on "Extract consensus from assemby" workflow with GFF output

          • Major - Major loss of function.
          • Tested

            Activity

              People

              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: