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  1. UGENE
  2. UGENE-7445

SAFE_POINT on "Extract consensus from assemby" workflow with GFF output

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    Details

    • Type: Bug
    • Status: Tested
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50
    • Fix Version/s: 51
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-51-2, DEV-51-3, DEV-51-4, DEV-51-5
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open Tools->NGS->"Extract consensus from assemby" workflow
      2. Set input assembly file to  common_data/ugenegb/1.bam.ugenegb
      3. Set document format="ugenegb" or "Vector NTI seqience"
      4. Run
        Error: Unknown data format for writing: usqlite
        or
        Error: Unknown data format for writing: vector_nti_sequence
      5. Set document format="GFF"
      6. Trying to recover from error: Add sequence to document: empty length at C:\BuildAgent\work\release\ugene\src\plugins\workflow_designer\src\library\DocWorkers.cpp:226

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              Assignee:
              kir Kirill Rasputin
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: