Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-7664

"Raw DNA-Seq data processing" fails when parameters in the directory with Russian letters and space

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Cannot Reproduce
    • Affects Version/s: 40.1
    • Fix Version/s: 51
    • Component/s: None
    • Labels:
      None
    • Environment:

      Windows10

    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Create  directory "Моя работа"
      2. Put in it samples/FASTAQ/eas.fastq and samples/FASTA/human_T1.fasta
      3. Open Tools->NGS data analyses->"Raw DNA-Seq data processing"
      4. Select "Read FASTQ Files with Reads" and set parameter=eas.fastaq
      5. Select "Map Reads with BWA-MEM" and set Reference Genome=human_T1.fasta
      6. Run
        Expected result: workflow finished without error
        Actual result:

      [ERROR][16:22] Subtask {DnaAssemblyMultiTask} is failed: Subtask {Align short reads} is failed: Subtask {Build Bwa index} is failed: Subtask {BWA tool} is failed: BWA tool exited with code 1Open external tool tab, see on the attachment that path is wrong.

       Note, that workflow finished without any error, if put these 2 files in the directory without space "Моя_работа" or in the directory with space but without Russian letters "My work".

       

        Attachments

        1. screenshot-1.png
          225 kB
          Svetlana Samoilenko

          Activity

            People

            Assignee:
            kir Kirill Rasputin
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: