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  1. UGENE
  2. UGENE-7678

[Sam] Crash opening the same sam file multiple times

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.13, 1.13.1, 1.13.2, 1.13.3, 1.14, 1.14.1, 1.14.2, 1.15, 1.15.1, 1.16, 1.16.1, 1.16.2, 1.17, 1.18, 1.19, 1.20, 1.21, 1.22, 1.23, 1.24, 1.25, 1.26, 1.26.1, 1.26.2, 1.26.3, 1.27, 1.28, 1.28.1, 1.29, 1.30, 1.31, 1.31.1, 1.32, 33, 34, 35, 36, 37, 38, 39, 38.1, 40, 41, 40.1, 42
    • Fix Version/s: 50
    • Component/s: NGS
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-46-5, DEV-50-RELEASE
    • Affect Type:
      Userdefined

      Description

      1. Create a big sam file according to the scenario from 7677 (first 7 steps).
      2. Open it many, many times (be careful, the files are large).
        Current state: crash or errors like "[Tasks] Task {Loading documents} finished with error: Subtask {Opening view for document: hg19_chr5_chr10_chr12_chrX.sorted_copy1.sam} is failed: Subtask {Adding document to project: hg19_chr5_chr10_chr12_chrX.sorted_copy1.sam} is failed: Subtask {BAM/SAM file import: hg19_chr5_chr10_chr12_chrX.sorted_copy1.sam} is failed: Subtask {Convert BAM to UGENE database (hg19_chr5_chr10_chr12_chrX.sorted_copy1.sam.bam_sorted.bam)} is failed: Converting assembly from hg19_chr5_chr10_chr12_chrX.sorted_copy1.sam.bam_sorted.bam to hg19_chr5_chr10_chr12_chrX.sorted_copy1.ugenedb failed: Invalid read length: -1Document was removed".

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              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              biserova Evelina
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: