Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-803

Include "embl/annotations/qualifier/test_0002" test and make correct parsing of quotes (") in Genbank qualifiers

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 1.10.1
    • Fix Version/s: 1.11
    • Component/s: None
    • Labels:
      None

      Description

      In UGENE-799 a temporary fix for incorrect parsing of multiline qualifiers were provided:

      The error was that the following lines:
      "/translation="MENQEVVNQLAGFEVKVSGQPLSKLPEDLYIPPDALRVFLEAFEG
      PLDLLLYLIKKHNIDILDIPIAEITRQYMQFVDLMREMRIELAAEYLVMAAMLAEIKSR
      LLLPRPVVEEENEQDPRAELVRRLQEYERYKKAAYDLDQLPRVGRDTFIADAAVPPMNI"

      were read as "MENQEVVNQLAGFEVKVSGQPLSKLPEDLYIPPDALRVFLEAFEG PLDLLLYLIKKHNIDILDIPIAEITRQYMQFVDLMREMRIELAAEYLVMAAMLAEIKSR ..." (i.e. space characters were inserted between different lines).

      Because of the temporary fixture test "embl/annotations/qualifier/test_0002" was excluded.

        Attachments

          Activity

            People

            Assignee:
            anton.klimov Anton Klimov (Inactive)
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: