Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-8078

[Wd, debug] Adding document from WD message to project

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 1.13.1, 1.13.2, 1.13.3, 1.14, 1.14.1, 1.14.2, 1.15, 1.15.1, 1.16, 1.16.1, 1.16.2, 1.17, 1.18, 1.19, 1.20, 1.21, 1.22, 1.23, 1.24, 1.25, 1.26, 1.26.1, 1.26.2, 1.26.3, 1.27, 1.28, 1.28.1, 1.29, 1.30, 1.31, 1.31.1, 1.32, 33, 34, 35, 36, 37, 38, 39, 38.1, 40, 41, 40.1, 42, 43, 44, 45, 46, 47, 48, 49, 50
    • Fix Version/s: None
    • Component/s: Workflow
    • Tests Type:
      GUI automatic
    • Affect Type:
      Userdefined

      Description

      1. Close the project if it is open (File->Close project).
      2. Enable the debug mode:
        1. "Preferences..."- >"Workflow Designer"->"Runtime settings".
        2. Check "Enable debugger".
        3. Click "OK" to confirm.
      3. Open the WD ("Run or Create Workflow" on the "Start Page").
        The "Choose Output Directory" dialog may appear. Set any directory and click "OK".
        Finally the WD window appeared.
      4. Open "Samples"- >"Alignment"->"Align sequences with MUSCLE".
        The "Align Sequences with MUSCLE Wizard" appears.
      5. Set "COI.aln" and "HIV-1.aln" from data/samples/CLUSTALW as "Input MSA(s)":
        1. Click "Dataset 1"->"Add file(s)".
          The "Select file" dialog appears.
        2. Choose "data/samples/CLUSTALW/COI.aln".
          The input is set.
      6. Click "Next >" and "Apply" to confirm and return to the WD window.
      7. Set a breakpoint on the "Align with MUSCLE" element:
        1. Select the "Align with MUSCLE" element on the Scene by clicking on it.
        2. Press Ctrl+B (⌘+B) (Break at element).
          The "Align with MUSCLE" element has a red frame.
      8. Press Ctrl+R (⌘+R) (Run workflow).
      9. The breakpoint was triggered. Open the message table:
        1. Click on the connection between the "Align with MUSCLE" and "Write alignment" elements.
        2. An empty table "Messages from 'Align with MUSCLE' to 'Write alignment'" appears.
        3. To get messages in the table, you need to enable the "Process one message" button on the main toolbar. To do this, select the "Read alignment" element on the Scene.
        4. Click "Process one message".
          A row appears in the table.
      10. Right-click the cell "Name: 'COI'; ..."->"Convert to document".
        The "Export Document" dialog appears.
      11. Make sure the "Add to project" checkbox is checked.
      12. Click "Export".
        Current state: the file is saved but not opened in UGENE.
        Possible solutions:
        1. Support the opening.
        2. Remove the "Add to project" checkbox ONLY in the WD dialog.

        Attachments

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-2453 Crash on saving debug message content to file in WD

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-8147 [Crash, wd, debug] Close wd tab with Discard button on some debug stage.

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. UGENE-8085 [Documentation] No info about messages in WD debug

          • Major - Major loss of function.
          • Tested

            Activity

              People

              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              biserova Evelina
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated: