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Type: New Feature
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Status: Closed
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Priority: Major
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Resolution: Duplicate
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Affects Version/s: None
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Fix Version/s: Some future release
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Component/s: NGS
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Labels:
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Affect Type:Userdefined
Following features of samtools are useful:
- convert sam <-> bam
- bam manipulations: sort, index, concatenate, merge
- pileup with options to convert to VCF (see http://samtools.sourceforge.net/mpileup.shtml)
- duplicates
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UGENE-458 Support SAMtools features
- Closed