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  1. UGENE
  2. UGENE-1632

Collapsing mode vs Tree View in the Alignment Editor

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    Details

    • Sprint:
      DEV-2013/08/29, DEV-2013/09/05, DEV-2013/09/12, DEV-2013/09/19, DEV-2013/09/26, DEV-2013/10/03, DEV-2013/10/10, DEV-2013/10/17, DEV-2013/10/31, DEV-2013/11/07, DEV-2013/11/14, DEV-2013/11/21, DEV-2013/11/28, DEV-2013/12/05
    • Affect Type:
      Userdefined

      Description

      Currently the collapsing of rows is partially supported when a tree view for an alignment has been added in the Alignment Editor. The problem is that the logic of the collapsing is not clear and there are multiple error. For example, synchronization of rows between the alignment and the tree is not taken into account. Nothing happens when a root node of the tree is collapsed. Sometimes collapsing behavior is incorrect when a tree node is collapsed.

      This feature either needs to be excluded for 1.12 release or all the cases must be specified, corrected and tested.

      Note that collapsing mode behavior was modified in UGENE-1600, but the collapsing mode for trees didn't work properly before these modifications.

        Attachments

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-2298 Unsynchronized positions of MSA sequences and Phy tree nodes on collapsing

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-2589 Create groups for MSA

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-2299 Change user interface of phylogenetic tree synchronized with alignment

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-2588 Tree branch is not collapsed when collapsed group in MSA

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              oigl Olga Golosova
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

                  Estimated:
                  Original Estimate - 4 hours Original Estimate - 4 hours
                  4h
                  Remaining:
                  Remaining Estimate - 2 days
                  2d
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