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UGENE-8123
[Msa, tree] Building trees in AE window and in a new window is incorrect
[Tree] Phylip bootstrap gives incorrect zero as distance
SAFE_POINT cancel the tree building subtask
[Wa] Unexpected messages in the log
Build tree for 3000 sequences is not shown as good as wanted
QT error in log after cancelling PHY tree creation.
[Msa, Tree] Synchronized tree has settings available that do nothing
MSA line numbering with tree is not working correctly
Crash in InputWidgetsControllers.cpp:245
Tree is poorly displayed
Parsing of LOCUS line in GenBank should be token-basedUGENE-6543
Create maximum parsimony treeUGENE-6351
Update Phylip to the latest version (3.697)
PhyML tool Error on UGNE.
Final "Rectangle" tree view is not the same as initial
An amino acid sequence is opened as text
Tree options for read only alingments
Problem building tree for an alignment in Vector NTI/AlignX format
PhyML branch support options are not taken into account
Crash on removing MSA with tree from the project
PhyML parameter "-o"
PhyML parameters -a and -v
Crash on building the second tree when the first tree is unloaded
Tree widget header looks bad on Mac
Update PHYLIP sources
Editing of sequence name labels in phylogenetic trees
In PHYLIP in bootstrap mode the "seed" value cannot be 1 or 3
Problem building tree from sample alignment on Windows
Rectangular phylogenetic tree doesn't try to take all available space
QWinFontEngine log warnings in PhyTreeView
PHYLIP task hangs GIU for a while on start on big alignments
The phil.tree is incorrect
Crash on building of phylogenetic tree by PHYLIP
Phylogenetic tree for big alignment is flattened
Phylogenetic trees printing doesn't work
A SAFE_POINT is triggered on a modification cancelling in an alignment with two attached trees
Two options panel tabs can be opened simultaneously by building trees in the Alignment Editor
SAFE_POINT on renaming sequences in an alignment with treeUGENE-5144
Remove multiple tabs for phylogenetic tree with MSA Editor
UGENE works unstable without all phylogenetics algorithms
Print tree dialog is incomplete
Display posterior probability values produced by MrBayes on a tree
Tree view is scrolled to the left or to the right on different systems
An unexpected confirmation dialog appears on collapsing phy tree nodes
Silent sync break between ph.tree and alignment
Image exporting button is not present in a collapsed menu in the embedded Tree View
Colors are updated incorrectly when moving vertical delimiter in the tree view
Vertical delimiter in tree view is moved with mouse pointer
Collapsing groups are not refreshed after tree swiching
Label formatting of the tree
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