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  1. UGENE
  2. UGENE-6097

Configuration of optional settings for Trimmomatic step ILLUMINACLIP

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: virogenesis
    • Fix Version/s: 1.31
    • Component/s: NGS, Workflow
    • Labels:
      None
    • Story Points:
      3
    • Epic Link:
    • Sprint:
      DEV-31-1, DEV-31-2
    • Affect Type:
      Userdefined

      Description

      Implement a dialog opened on clicking of the "Optional" button in the ILLUMINACLIP settings widget (see UGENE-6095).

      The dialog should have title "Configure ILLUMINACLIP Optional Settings".

      The dialog layout should approximately as on the attached image "configure_illuminaclip_optional_settings.png" that is:

      1. Checkable group "Provide optional settings" (unchecked by default) with two settings:
        • "Min adapter length" with a spin box value. The default value should be "8". Possible values - INT > 0.
        • "Keep both reads" with a combo box with values "True" and "False". The default value should be "False".
      2. Button "Apply", "Cancel", "Help".

      If the group check box is checked then a string produced by the "Configure Trimmomatic Steps" dialog should contain the specified additional settings, for example, "ILLUMINACLIP:TruSeq3-SE:2:30:10:8:true".

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              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Svetlana Samoilenko
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                Dates

                Created:
                Updated:
                Resolved: