Export - CSV (All fields)
Export - CSV (Current fields)
- UGENE-4245
Objects statistics & report exporting - UGENE-2040
Embed Mira assembler - UGENE-3573
Methylation data analysis - UGENE-3575
MultiFASTA creation when indexing genomes - UGENE-3572
Integrate a bisulfite sequencing aligner - UGENE-3173
Text is not noticeable on mac - UGENE-4708
Reference + Variants = New Sequence - UGENE-3548
Integrate other RNASeq differential expression workflow - UGENE-3549
Integrate workflow for cSNPs - UGENE-3550
Integrate structural variants analysis workflow - UGENE-3547
Integrate other variant calling workflows - UGENE-3246
Invalid layout in the "Align Sequencing Reads" dialog on Mac - UGENE-4175
Several assemblies in the Assembly Browser - UGENE-4157
Suppress "BioStruct3DView frame rendering time" messages in trace log for release version - UGENE-5347
Strange characters in FastQC HTML report - UGENE-1335
Please consider replacing convenience copies of third party software as plugins - UGENE-1181
Genome aligner OpenCL max short reads/reference sequence size per task - UGENE-1070
Refine UGENE Genome Aligner - UGENE-700
Selecting "Cancel" in the "Import BAM file" dialog causes an error - UGENE-548
AB: customization of database cache size - UGENE-488
Support SAM index files (sai) - UGENE-495
Implement export BAM feature - UGENE-1684
Common styles for hints, info messages, errors, etc. - UGENE-951
Freeform field for external tools in GUI - UGENE-918
Annotate differences from reference during consensus export - UGENE-653
Customizable scale in coverage graph - UGENE-452
Support BAS file format - UGENE-459
Support strand-oriented visualization of coverage plot - UGENE-449
Support 'Scaled' mode in assembly overview - UGENE-428
Calculate assembly consensus string during import to ugenedb - UGENE-429
Implement global (unzoomable) overview for assembly browser - UGENE-306
Add Shtirlitz counters to assembly browser - UGENE-20
"Align short reads dialog" does not save align method selected - UGENE-204
add check for md5 hash when associate reference with assembly - UGENE-152
'Zoom' in button not disables when max zoom reached - UGENE-455
Support all of major assembly file formats - UGENE-456
Support search facilities in AB - UGENE-7520
Incorrect tooltips in "Configure Trimmomatic Steps" window - UGENE-4566
Integrate Pilon for variant calling - UGENE-6198
Error message while validating workflow is not accurate - UGENE-6220
"Map RNA-Seq Reads with TopHat" element can't reuse index of known transcript file - UGENE-6242
Hide "Skip pairing" in case of single-end input reads in BWA-MEM - UGENE-6167
Do not output Trimmomatic adapters to the workflow output folder - UGENE-6157
Include other databases for NGS classification tools - UGENE-6132
Size and resizing of the "Configure ILLUMINACLIP Optional Settings" dialog - UGENE-6142
Error on "HEADCROP:111111111" for Trimmomatic ILLUMINACLIP step - UGENE-6116
In "Improve Reads with Trimmomatic" output and log files are merged - UGENE-6023
Option for UGENE data in the online installer - UGENE-5894
Online installer: "Filter by classification" component - UGENE-5891
Add "Build DIAMOND Database" workflow element
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